References and resources

Books

Generic

• The Good Research Code Handbook
• OHBM Brainhack 2020 talk: #Matlab / #Octave : divide and conquer m-scripts
• Code aesthetic: youtube channel with short videos on good coding

Structuring your project

• Structuring your data
• naming things
• Project structure

Seven quick tips for analysis scripts in neuroimaging

• article
• twitter thread

Testing and refactoring

• Test and code podcast

  • The Good Research Code Handbook - Patrick Mineault
  • Testing in Scientific Research and Academia - Martin Héroux - part 1
  • Testing in Scientific Research and Academia - Martin Héroux - part 2

• Turing way: testing

• Intro to refactoring

• Catalog of refactoring

Style guides

• matlab-guidelines by nschloe

• matlab-guidelines by Richard Johnson

Linter and formatter

• Turing way: code quality

• miss_hit

Continuous integration

• Turing way: continuous integration

• MATLAB in CI

  • general documentation

• MATLAB in gitlab CI

  • documentation
  • template pipeline

Templates

• template repo for matlab project
  • install with cookiecutter

Blog posts

• Matlab clean code
• Transition your workflow
• What I learned from porting a MatLab toolbox
• Continuous Integration and Delivery with MATLAB